PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00123.1_g00043.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 501aa    MW: 56073.1 Da    PI: 5.3746
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00123.1_g00043.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1398142347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +W++ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
  Rsa1.0_00123.1_g00043.1  98 PWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 142
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.342157IPR017930Myb domain
SMARTSM007179.6E-6455IPR001005SANT/Myb domain
SuperFamilySSF466899.57E-11661IPR009057Homeodomain-like
CDDcd001672.08E-5853No hitNo description
PROSITE profilePS5129418.11891147IPR017930Myb domain
SuperFamilySSF466896.58E-1593148IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-1594146IPR006447Myb domain, plants
SMARTSM007174.4E-1195145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-997141IPR009057Homeodomain-like
PfamPF002491.2E-1198142IPR001005SANT/Myb domain
CDDcd001672.80E-998143No hitNo description
PROSITE profilePS516716.569309393IPR002912ACT domain
SuperFamilySSF550216.34E-6422477No hitNo description
PROSITE profilePS516719.002424501IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.8E-5427472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDMVSSQWTR SEDKMFEQAL VLFPEESTNR WEIIADQLQK SAGEVKEHYE ALVHDVIEIE  60
SGRVHVPYYM DDSAGWDTTG WDTFGSKHGE NERKRGTPWS ESEHKLFLVG LKRYGKGDWR  120
SISRNVVVTR TPTQVASHAQ KYFIRQNSVK KERKRSSIHD ITTVDTGLAM PGSNMDWNRQ  180
QGSPVQPQQQ QHIMSEFGQQ TTPGGHFEDL GFAPFTSSSS SATSCQTRSP ALTSPPDLLS  240
SPAFFADPQK FLDGVIPLST RSIRKSRVYA LINSTNATPP SYPKTEDDDD FVPMPMVLID  300
QDADPEATIV QLSFGDRLGA LIDTMRALKD LGLDVIKGTV STEGSVKQTK FSITKLDTGR  360
KVEDPDSLEQ IRLTIINNLL KYHPECSDQL AMGETFGIKA PKKKIDVDIA THIHVKEDGP  420
KRSLLCIETA DRPGLVVEMI KVMADINIDV ESAEIDTEGL VAKDKFHVSY QGQALNSSLS  480
QVLVNCLRYF LRRPETDIDS Y
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in feedback regulation of amino acid metabolism. {ECO:0000303|PubMed:21861936}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00123.1_g00043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0873620.0AY087362.1 Arabidopsis thaliana clone 34592 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445562.10.0PREDICTED: ACT domain-containing protein ACR12-like
SwissprotQ9LZ231e-169ACR12_ARATH; ACT domain-containing protein ACR12
TrEMBLA0A3P6D4R00.0A0A3P6D4R0_BRACM; Uncharacterized protein
STRINGBra009433.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM725622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-108MYB family protein
Publications ? help Back to Top
  1. Peltier JB,Ytterberg AJ,Sun Q,van Wijk KJ
    New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.
    J. Biol. Chem., 2004. 279(47): p. 49367-83
    [PMID:15322131]
  2. Rutschow H,Ytterberg AJ,Friso G,Nilsson R,van Wijk KJ
    Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.
    Plant Physiol., 2008. 148(1): p. 156-75
    [PMID:18633119]
  3. Sung TY,Chung TY,Hsu CP,Hsieh MH
    The ACR11 encodes a novel type of chloroplastic ACT domain repeat protein that is coordinately expressed with GLN2 in Arabidopsis.
    BMC Plant Biol., 2011. 11: p. 118
    [PMID:21861936]