 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00121.1_g00044.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 271aa MW: 30451.4 Da PI: 8.5535 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00121.1_g00044.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169.6 | 1e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrF Ptdeel+v+yL++kv+g +++l ++i ++d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkat
Rsa1.0_00121.1_g00044.1 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QIIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKAT 98
79***************************9.89***************8777899******************************* PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g+dk ++s +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
Rsa1.0_00121.1_g00044.1 99 GTDKVITS-DGHRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 139
*******9.999****************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MGVREKDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQIIGDID LYKFDPWDLP 60
SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSDGHR VGIKKALVFY 120
AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK LDDWVLCRIY YKKMSGSQQR QAVVAPVQAC 180
LEDQSTNVSP SSSSSQLDDV LDSFPEMKDG SFNLPRMNSL RTILNGNFDW ASLAGLNPIP 240
ELAPALELSN YGGYQSFQSA ESGCRNSHFA G
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-105 | 1 | 169 | 7 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC966756 | 0.0 | KC966756.1 Brassica napus NAC transcription factor 72 (NAC72.1) mRNA, complete cds. |
