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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00119.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 386aa MW: 44248.1 Da PI: 5.4811 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.2 | 1.5e-34 | 17 | 108 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+ weF+++ F Rsa1.0_00119.1_g00022.1 17 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFSNDDFV 93 9**************************************************************99988.........********* PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+ +l+++i+r+k Rsa1.0_00119.1_g00022.1 94 RGQPHLMKNIHRRKP 108 ************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.62E-35 | 13 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-62 | 13 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-37 | 14 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.5E-31 | 17 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-19 | 17 | 40 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-19 | 55 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.8E-19 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MDESNHGGSS STSLPPFLTK TYEMVDDSSS DSIVSWSQSN KSFIVWNPPE FSRDLLPRFF 60 KHNNFSSFIR QLNTYGFRKA DPEQWEFSND DFVRGQPHLM KNIHRRKPVH SHSLPNLQSQ 120 QSPLTDSERQ RMNNQIERLT KEKQVLLEEL HKHEEERELF EQQVKKLKDR LQHMEKRQRT 180 MVSSVSQVLE KPELALNLSP CLPETNERKR RFPRVGLETC GVVREEGSTS TSSHDATTEH 240 QVERLESSLA IWENLVSDSC ESMSQQSTRN MMRLDVDESS TCPESPPLSC IQLSIDIRLK 300 SPPSPRTIDM NSEPDVSKEQ NSVAPAPLAP AAGANDVFWQ QLLTENPGST EQREVQSEKS 360 EDRSEKCWWN SGNVNTITEQ LGHLTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-23 | 7 | 106 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 7 | 106 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 7 | 106 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00119.1_g00022.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ435241 | 0.0 | HQ435241.1 Brassica napus cultivar Deyou No.5 heat shock transcription factor A4a (HsfA4a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018485002.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Swissprot | O49403 | 0.0 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | A0A3P6ERE6 | 0.0 | A0A3P6ERE6_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g106320.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 0.0 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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