![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00117.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 137aa MW: 15223.6 Da PI: 4.9908 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 12 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIr ++ +r++lg+f tae+Aa+a+++a+ +++g Rsa1.0_00117.1_g00008.1 12 KYRGVRKRP-WGKYAAEIRN----SaRHgARVWLGTFNTAEDAARAYDRAAFSMRG 62 8********.*******999....33236*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.00E-19 | 12 | 71 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-23 | 12 | 72 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.9E-35 | 12 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 12 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.723 | 12 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-14 | 12 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MEHGVSNTNE VKYRGVRKRP WGKYAAEIRN SARHGARVWL GTFNTAEDAA RAYDRAAFSM 60 RGQKAILNFP HEYPMMTDGP SGRSENVVAS SSSQFSGTGG SSVKEVIEFE YLDDSLLEEL 120 LEGGESYNQD DQNDANH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-38 | 12 | 116 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00373 | DAP | Transfer from AT3G23220 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00117.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438400.1 | 4e-99 | PREDICTED: ethylene-responsive transcription factor ERF095-like | ||||
Swissprot | Q9LTC6 | 2e-47 | ERF95_ARATH; Ethylene-responsive transcription factor ERF095 | ||||
TrEMBL | A0A0D3D5K1 | 4e-66 | A0A0D3D5K1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ELV9 | 4e-66 | A0A3P6ELV9_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g040820.1 | 6e-67 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23220.1 | 2e-38 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|