 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_00113.1_g00022.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 349aa MW: 40076.8 Da PI: 6.1064 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00113.1_g00022.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 161.6 | 3e-50 | 10 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70
lppGfrFhP+deelv++yL++k+++k+ + + e+d++ +ePw+Lp +k + kewyfFs rd+kyat
Rsa1.0_00113.1_g00022.1 10 LPPGFRFHPSDEELVCHYLCNKIRAKSdhgdvedD---DvdealkgasDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYAT 92
79***********************9976655441...1556666764699*************87788999************** PP
NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
g r+nrat sgyWkatgkd++v++ +++lvg++ktLvfy++rap+g kt+W+mhe+rle
Rsa1.0_00113.1_g00022.1 93 GYRTNRATVSGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
************************967888***************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VEDDDVDEAL KGASDLVEID 60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT VSGYWKATGK DRTVMDPRTS 120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDLSLQDSN 180
YDNDHQTQRL EVNDAPDLNY APNYNNQLQP LLSSPPSTTI DPPHHHDQWE QLMKQPSRII 240
DHPCHHHCQH QSTCGWEQMM IGSMSSSSSH GPDHESLHNL LYADKNNSVN IAADHHDQNY 300
EKILLPSYIA SLDHDKTCMG SSFDIGMISD LHMECAGLSF ETENLLAFH
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-44 | 10 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-44 | 10 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-44 | 10 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-44 | 10 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-44 | 10 | 170 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 1e-44 | 10 | 170 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF738274 | 0.0 | KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds. |
