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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00113.1_g00021.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 306aa MW: 33908.1 Da PI: 9.4046 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00113.1_g00021.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 107.2 | 2e-33 | 60 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
lp+G++F+P+d+e++ +L+ kv+++ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r++
Rsa1.0_00113.1_g00021.1 60 LPAGVKFDPSDQEVL-GHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKV 143
799**********99.89******9996665442222223554445**********.666777899******************74 PP
NAM 79 k.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ + +W++tgk+++vl+ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l
Rsa1.0_00113.1_g00021.1 144 HtdsevggETRWHKTGKTRPVLT-GGRVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 201
43455555778************.9*************6658999************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MTWCNDSSDV QTVETIIIPS PTVVESPEAS FQVSCHKTCP SCGHKFKFHE QAGIHDLPGL 60 PAGVKFDPSD QEVLGHLEGK VRDDARKLHP LIDEFIRTID GENGICYTHP EKLPGVSKDG 120 TVRHFFHRPS KAYTTGTRKR RKVHTDSEVG GETRWHKTGK TRPVLTGGRV KGYKKILVLY 180 TNYGKQKKPE KTNWVMHQYH LGTNEEEKEG ELVVSKIFYQ TQPRQCGGSL AAAATEKERP 240 YLHGHHLGGG GTGSRHLYHK NGNVKGTGGG GSARASEYYN NIPAIISFNQ SGIQNHLVHG 300 TQPFIP
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |