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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00110.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 258aa MW: 29020.6 Da PI: 6.79 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.5 | 3.6e-13 | 29 | 113 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 W+++ + +Liea ++ +l+rg+l++++W+ev++++ +g ++ +qCk++++ l+k+yk +k+ s++ + Rsa1.0_00110.1_g00008.1 29 WSEDATATLIEAWGDRYVNLSRGNLRQNDWREVADAVnsihggGGGGRPKTDVQCKNRIDTLKKKYKTEKAKPCP------SSWCF 108 ****************************************99999999*******************99987664......35888 PP trihelix 82 fdqle 86 f++l+ Rsa1.0_00110.1_g00008.1 109 FERLD 113 88886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-24 | 27 | 114 | No hit | No description |
SMART | SM00595 | 6.6E-4 | 36 | 120 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
METTPETQPK SQSQTGSSHR LPPGREDWWS EDATATLIEA WGDRYVNLSR GNLRQNDWRE 60 VADAVNSIHG GGGGGRPKTD VQCKNRIDTL KKKYKTEKAK PCPSSWCFFE RLDFLIGPVA 120 AKKCTGVVRP AVVKNPTGSK SSGSSLDDED EEEEDDEVGD WGFVVRKHRR VEDVYPSGGE 180 GSSSRELARA ILKLGEVYER IEGAKQRMMV ELEKQRMEAA KELELQRMNM LMDMQMEIER 240 SKLGKRRAVA ASDKKLSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00110.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189253 | 1e-109 | AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence. | |||
GenBank | AC189546 | 1e-109 | AC189546.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004M10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436578.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A078HEW5 | 1e-144 | A0A078HEW5_BRANA; BnaA01g31020D protein | ||||
STRING | Bra034165.1-P | 1e-140 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 1e-118 | sequence-specific DNA binding transcription factors |