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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00108.1_g00039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 21378.3 Da PI: 9.4231 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.5e-10 | 16 | 63 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ ++eL +llP+ + + l + L +A +YIk+Lq Rsa1.0_00108.1_g00039.1 16 RKTVEKNRRIQMKALYSELNSLLPQT---SRESLALPDQLDEAANYIKKLQ 63 5789*********************9...8999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.51E-4 | 3 | 66 | No hit | No description |
PROSITE profile | PS50888 | 10.728 | 11 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.43E-9 | 16 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 16 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0047 | 17 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-6 | 17 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDQRRSNANQ SRSTDRKTVE KNRRIQMKAL YSELNSLLPQ TSRESLALPD QLDEAANYIK 60 KLQVNVEKKK ERKRKLVATS AFEKLNSTGS SSMSSSVDVS VLRKLPRIEI QETGPVLHIF 120 LVTSLEHKFM FHEITRVITE ESGAEITHAG YSIVDDAVFH TIHCKLEDCD YGAGSRISES 180 LKKLVNTVN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 75 | EKKKERKRKL |
2 | 68 | 75 | KKERKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00108.1_g00039.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493686 | 1e-139 | AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468619.1 | 1e-138 | PREDICTED: transcription factor bHLH36-like | ||||
Swissprot | F4JIJ7 | 1e-90 | BH162_ARATH; Transcription factor bHLH162 | ||||
TrEMBL | A0A398ASR3 | 1e-114 | A0A398ASR3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DAH6 | 1e-114 | M4DAH6_BRARP; Uncharacterized protein | ||||
STRING | Bra013486.1-P | 1e-115 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 6e-85 | bHLH family protein |
Publications ? help Back to Top | |||
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