PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00102.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HRT-like
Protein Properties Length: 390aa    MW: 43340.4 Da    PI: 9.7582
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00102.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like46.46.6e-15193223131
                 HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                              +CGv+ edG++C++ Pv gRK C eHKG+Ri
  Rsa1.0_00102.1_g00022.1 193 VCGVLKEDGTTCSTAPVTGRKGCTEHKGQRI 223
                              7*****************************7 PP
2HRT-like43.26.5e-14243273131
                 HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                              iCGvil   + C+ +Pv  RKRCe HKGmR+
  Rsa1.0_00102.1_g00022.1 243 ICGVILPEMIRCRSKPVSRRKRCEDHKGMRV 273
                              8*****************************7 PP
3HRT-like24.35.2e-08315341228
                 HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                              C ++++ G +C+r++  g  RC++HK 
  Rsa1.0_00102.1_g00022.1 315 CEATTKSGLPCTRSAPNGSRRCWQHKE 341
                              99************************7 PP
4HRT-like63.23.6e-20358388131
                 HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                              +CGv+l dGsvC+++PvkgRKRC eHKGmRi
  Rsa1.0_00102.1_g00022.1 358 VCGVKLYDGSVCEKPPVKGRKRCLEHKGMRI 388
                              7*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MYKRDDYLRN NPDGVFSKWQ GFARSMRLLP KPISETAELR RSTVADYSLI SRDLAPKILI  60
GAKSREDLRV GKDFVGSSRY RVKESIQGLG VAVSIHDLKA SSLGPTESIR TRLRSYGKSV  120
PHQDSPKKLG SILKDKKHGL AEEREISCVG AEENNTNNKV HAASILRLSR SRPQPVLERH  180
DDDVVDGSDF ASVCGVLKED GTTCSTAPVT GRKGCTEHKG QRISCLPPPP AKKLPCEEET  240
EEICGVILPE MIRCRSKPVS RRKRCEDHKG MRVNAFFFLL NPTERDKILK EDNKSKPETR  300
TSSTNQEEPG QGLLCEATTK SGLPCTRSAP NGSRRCWQHK ENKSSENVQT SATVTQVVCG  360
VKLYDGSVCE KPPVKGRKRC LEHKGMRITS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269|PubMed:16244914}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00102.1_g00022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5335060.0AY533506.1 Brassica napus effector of transcription mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448962.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION-like isoform X1
RefseqXP_018449191.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION-like isoform X1
SwissprotA2RQG70.0ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBLA0A3N6QBK70.0A0A3N6QBK7_BRACR; Uncharacterized protein
STRINGBra026458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.11e-112