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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00101.1_g00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 20505.4 Da PI: 7.5101 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.4e-10 | 29 | 78 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + f+ Lr++lP ++K +e + Av++Ik+ Rsa1.0_00101.1_g00036.1 29 KLLHRDIERQRRQEMATLFASLRDHLPLqY---IKGKRAVSEHVSGAVNFIKD 78 6679************************66...9999999***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-12 | 24 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.13E-8 | 25 | 78 | No hit | No description |
PROSITE profile | PS50888 | 11.757 | 27 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-7 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-8 | 29 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MPLIVSAGDG GSGGSDIPQR TVDNKQKKKL LHRDIERQRR QEMATLFASL RDHLPLQYIK 60 GKRAVSEHVS GAVNFIKDTE TRIKELSARR DELSRETCYK SNPDLAGTAS ELGNSVPASV 120 LVQPCVSGFE VVVSSNSLGP QALPLSRVLE VLQELGLEVI SSLTTRVNES LIHTIRVEVN 180 SFGCLDLA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00101.1_g00036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481571.1 | 1e-134 | PREDICTED: transcription factor bHLH126-like | ||||
Swissprot | Q9STJ6 | 4e-86 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A078IIE7 | 1e-111 | A0A078IIE7_BRANA; BnaA03g47380D protein | ||||
TrEMBL | A0A3P5ZT97 | 1e-111 | A0A3P5ZT97_BRACM; Uncharacterized protein | ||||
STRING | Bo7g110290.1 | 1e-110 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 3e-80 | bHLH family protein |