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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00100.1_g00020.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 398aa MW: 45633.4 Da PI: 4.954 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00100.1_g00020.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 40.3 | 9.6e-13 | 236 | 339 | 1 | 114 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85
lp G++F+Pt e+ +Lk+k+ g+++++ v +e di+++ P+dLp + ee++wy+++ + k g++ r + W
Rsa1.0_00100.1_g00020.1 236 LPEGIHFRPTSLEMS-IFLKQKALGQPVTACIVPEERhDIFSIPPRDLPG--YPEERHWYYYCMKPK----GQQDPR----SLWTR 310
699**********97.9**********99977755556***********4..35789******9866....667777....48*** PP
NAM 86 tgkdkevlskkgelvglkktLvfykgrap 114
+d++v++ +++ vg+k+ +++ + +++
Rsa1.0_00100.1_g00020.1 311 FREDTAVFDLEENCVGIKRRFTLTEREEE 339
*********9***********99965444 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MADKKDLDPN PLAGLIVSGQ WLVLDSSAFL LFLSASNLDS VTPCNVEDGT FLCPLNKRTM 60 AERSFTRAHE PGFKKQKLEQ LQRKAYHSVL LASKSEPSGT SHNKSQIIQK LMNEWNIDQE 120 THISVSEKID LSANNATWSP NSLLNPESLA GKRVHARSPN DEEDDSPTSK KIKLHKQAYD 180 HVLHAFNAES PALSHSRTLI MQDLLEECNK AHIKTDPPLV EAFNTPKIVE PRSRLLPEGI 240 HFRPTSLEMS IFLKQKALGQ PVTACIVPEE RHDIFSIPPR DLPGYPEERH WYYYCMKPKG 300 QQDPRSLWTR FREDTAVFDL EENCVGIKRR FTLTEREEES DDDIFLPDEE EPPVEEWFIR 360 EISLPSSVAD TDLVLCHVVL KMKKKTQDEE YYEEEEDE
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189456 | 4e-86 | AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence. |