 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00096.1_g00017.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
ERF |
| Protein Properties |
Length: 260aa MW: 29446.3 Da PI: 10.2759 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00096.1_g00017.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 65.5 | 1e-20 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
g++GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+ +l+g
Rsa1.0_00096.1_g00017.1 132 GFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAAMRLRG 181
79*******.**********32....25*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MENTVDAKRL QLSFPLRSGV ETHQSLETYG LYKDTPLVCM PFSGSKPPFS NLTVTEPFNG 60
PDTFDISSLF SPDPKPVPAS QRRVMDDSIA AIVGENVLFG SNNIKVSEQH FTATETEDGV 120
KRWRKMPEKN GGFRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEEAAR AYDAAAMRLR 180
GTKAKTNFVV HPVFPVEIAE TQSSTTEEDR RRRKKKRMNV RKCVKVTSVE QLFSDTTRNL 240
TSSSNDGNVI CPFNNLKKWA
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 210 | 216 | RRRKKKR |
| 2 | 211 | 216 | RRKKKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC018848 | 5e-72 | AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence. |
| GenBank | AC018849 | 5e-72 | AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence. |
| GenBank | AY560844 | 5e-72 | AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds. |
| GenBank | BT026038 | 5e-72 | BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds. |
| GenBank | CP002684 | 5e-72 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | DQ446446 | 5e-72 | DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds. |
