|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Rsa1.0_00096.1_g00015.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
WRKY |
Protein Properties |
Length: 262aa MW: 30225.6 Da PI: 4.4719 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00096.1_g00015.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 60.6 | 2.8e-19 | 102 | 162 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++k s + r YYrC++a +C+++k+v++ ++ p+v +tY ++H +e
Rsa1.0_00096.1_g00015.1 102 NDCFTWRKYGQKKIKTSSHQRCYYRCAYAkdrNCNATKRVQQIQDTPSVYRTTYVEKHVCE 162
8***************************99999*************************986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MFQGADKAVE ALLRGQESAN LLKTMLEHQR TSSVSIEPLF DTLLDSFSFA LSLFTSSNTQ 60 PHRDSSQSKS TPVTARKSPK KNSNEEECLE HYRDDSPTPL HNDCFTWRKY GQKKIKTSSH 120 QRCYYRCAYA KDRNCNATKR VQQIQDTPSV YRTTYVEKHV CEVTSFPEPN DDIANGSKMI 180 RFDTFDQAMP DAVIMPELVQ VEQEAITIEE DTDQIMNLEF DINELLVDDD DQLWAYQFPP 240 FSPGDLMFLD DLSEFDYNPF HV
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KF430070 | 0.0 | KF430070.1 Brassica rapa WRKY transcription factor 64 (WRKY64) mRNA, complete cds. |