PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00096.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 262aa    MW: 30225.6 Da    PI: 4.4719
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00096.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.62.8e-19102162259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++k s + r YYrC++a   +C+++k+v++ ++ p+v  +tY ++H +e
  Rsa1.0_00096.1_g00015.1 102 NDCFTWRKYGQKKIKTSSHQRCYYRCAYAkdrNCNATKRVQQIQDTPSVYRTTYVEKHVCE 162
                              8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.93696164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.6E-2196163IPR003657WRKY domain
SuperFamilySSF1182902.75E-2098163IPR003657WRKY domain
SMARTSM007744.0E-27101163IPR003657WRKY domain
PfamPF031066.5E-20102161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFQGADKAVE ALLRGQESAN LLKTMLEHQR TSSVSIEPLF DTLLDSFSFA LSLFTSSNTQ  60
PHRDSSQSKS TPVTARKSPK KNSNEEECLE HYRDDSPTPL HNDCFTWRKY GQKKIKTSSH  120
QRCYYRCAYA KDRNCNATKR VQQIQDTPSV YRTTYVEKHV CEVTSFPEPN DDIANGSKMI  180
RFDTFDQAMP DAVIMPELVQ VEQEAITIEE DTDQIMNLEF DINELLVDDD DQLWAYQFPP  240
FSPGDLMFLD DLSEFDYNPF HV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-121061621369OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00096.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300700.0KF430070.1 Brassica rapa WRKY transcription factor 64 (WRKY64) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470240.10.0PREDICTED: probable WRKY transcription factor 64
SwissprotQ9C5576e-83WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLV5RF921e-155V5RF92_BRACM; WRKY transcription factor 64
STRINGBo2g095820.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.11e-76WRKY DNA-binding protein 64