PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00094.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 269aa    MW: 29771.9 Da    PI: 9.8067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00094.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00186887221
                             EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                             +C+ Cgk+F ++  L  H+r
  Rsa1.0_00094.1_g00021.1 68 PCTECGKTFWSPKALFGHMR 87
                             5******************8 PP
2zf-C2H210.80.0015156178123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C+k+F ++  L  H  +H
  Rsa1.0_00094.1_g00021.1 156 FECGGCKKVFGSHQALGGHRASH 178
                              89************999999888 PP
3zf-C2H2130.00031205227123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C +++s+   L+ H+r H
  Rsa1.0_00094.1_g00021.1 205 HKCNICYRVYSSGQALRGHMRFH 227
                              79*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.1186794IPR007087Zinc finger, C2H2
PfamPF139121.1E-76791IPR007087Zinc finger, C2H2
SMARTSM003550.0156789IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.54E-96889No hitNo description
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-46989IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.54E-9151178No hitNo description
PfamPF139121.0E-7155179IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66156183IPR007087Zinc finger, C2H2
SMARTSM003553156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576678.78E-6202231No hitNo description
PfamPF139122.1E-8204228IPR007087Zinc finger, C2H2
SMARTSM003550.08205227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637205232IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MIRNQFPPAS NAIIPIFPNP NLQLALSPSY HQSPRKKRTK TVALPSSSSP KPKYTKKPDP  60
NAPKITRPCT ECGKTFWSPK ALFGHMRCHP ERQWRGINPP PNHRGRLTPA LSSKHLSQRS  120
ANLVSLMSEE DYEVASYLLM LSEAAPLSSS TSGERFECGG CKKVFGSHQA LGGHRASHKN  180
VKGCFAIRNV NGGPVTVTSN QDEHHKCNIC YRVYSSGQAL RGHMRFHCWE REDETMFVGA  240
LDLNVPVTTH DLSTSVDISG CSLDLRLGL
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00094.1_g00021.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896561e-174AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452607.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-118ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A3P6FJY41e-155A0A3P6FJY4_BRAOL; Uncharacterized protein
STRINGBo1g006590.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-115C2H2-like zinc finger protein