PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00094.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 965aa    MW: 106649 Da    PI: 6.516
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00094.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.81.1e-28641691252
                   RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Rsa1.0_00094.1_g00020.1 641 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 691
                              799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.041630711IPR003035RWP-RK domain
PfamPF020421.1E-24644691IPR003035RWP-RK domain
SuperFamilySSF542772.05E-23853949No hitNo description
Gene3DG3DSA:3.10.20.2401.3E-22861946No hitNo description
SMARTSM006666.9E-27862947IPR000270PB1 domain
PROSITE profilePS5174528.375862947IPR000270PB1 domain
PfamPF005646.1E-18864946IPR000270PB1 domain
CDDcd064077.03E-41864946No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MEGSGGGGDG GFLPNPSFGA FPETAMDMDF MEELFFDGCW LETTDGKSLR HTAGQPAPNS  60
INLNNNNNNN NSFPYGYQFS ETPSQDHISN ADTGRKFPPI TPGFLKTEAL TNQPMTQVPF  120
DQSAAMSSAQ AEKFLLEETE RGRRYWIAPR TRQGPSSSVK DRLVQAINGL EVQEKDFLIQ  180
IWVPIQQEGK NFLTTSEQPH FFNPKYSSLK RYRDVSVSYN FLADEDSKES VGLPGRVFLG  240
KLPEWTPDVR FFRSEEYPRI KEAQRCDVRG SLALPVFESG SGTCLGVVEI VTTTQKMNYR  300
PELENICKAL EAVNLRSSAN LQSPSSEFLQ AYKHFYSAVI PEVSVFLTSV CRSYDLPLAL  360
TWAPCARQGR GGSRHSDENF SECVSTLDSA CFVLDQQSHN FQEACSEHHL LQGEGIVGKA  420
FKATKLFFVP EVTTFSKTNY PLAHHAKISG LHAALAVPLK NKFNGSVEFV LEFFFPKSCL  480
DTEAQQETLK SLSVTLQQDF RSLHLVIDKE MELEVVFPVR EELLFSENTL RVDAETGESM  540
KPLPLEEISQ EDSSWISHMI NANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNNNNHSSF  600
LSDADQFQKA SNSGFDSASF GVGQSLLGSR RPGEKRRTKT EKTIGLEVLR QYFAGSLKDA  660
AKSIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLKKLQL VIDSVQGVQG SIQLDSFYTS  720
FPELSSPNNV SGSGTGTGTS FKNPLTENGV SVQGNAVAPT SPPPSSSCSH SSGSSTCCST  780
GANQSTNTAN TSNTISTLMA ENAGAILKRA RSEVRLRTAN QEEDTKFLSR TLSHRAFSEH  840
PPLFKNLPRS RSSLKGAGGG GASKVKASFG EAKVRFTLLP TWGFRELQQE IARRFNIDNN  900
IIATFDLKYL DDDKEWVLLT CEADLEECID IYRSSQSRTI KISVHEASQG KLGGSFGSTG  960
PVPLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00094.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896560.0AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471933.10.0PREDICTED: protein NLP2
RefseqXP_018471934.10.0PREDICTED: protein NLP2
RefseqXP_018471935.10.0PREDICTED: protein NLP2
RefseqXP_018471936.10.0PREDICTED: protein NLP2
RefseqXP_018471937.10.0PREDICTED: protein NLP2
RefseqXP_018471938.10.0PREDICTED: protein NLP2
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLM4D5430.0M4D543_BRARP; Uncharacterized protein
STRINGBra011600.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein