PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00093.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 386aa    MW: 44221.9 Da    PI: 5.7412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00093.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11212254754
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                Er+RR+riN+++  Lr ++P+      +K++K  +   Av+YI++L
  Rsa1.0_00093.1_g00003.1 212 HSERKRRERINQRIYALRAVVPNV-----TKMNKTGTISDAVDYINQL 254
                              57*********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-142143IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.4E-15196266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-12203259No hitNo description
PROSITE profilePS5088815.034205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13212268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9212254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MKEFLRPFVD SREWDFCVIW KLGDDPSRFI EWVGCCCSGS YIDKNIKHEH EEEEEVGSFC  60
RDEDNKHHIR TLACESLSRF PLFVPLYPGI HGEVVMSKTP KWLVNSAPGS KQDIFSTRVL  120
VPVRDGLVEL FSFIMKPVDE SMVDLIISRC NAFFEPFPEQ ALPFKIIPRA EESMLLHKDV  180
EDDAVMQNTM DVRDSSNKKM APKENFKSKN LHSERKRRER INQRIYALRA VVPNVTKMNK  240
TGTISDAVDY INQLLVEKQK LEGELRGFNE VECRGIIAAE VEESAVANSQ AGKVLSGLNK  300
KVYNEVNLEV YETGERGFLI RVEQEHKRDG FKRLLEAIDS CGLEIIDVNF TRLGLTVMTV  360
LNVKANKDGT TIEILRDLLL KMMITN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00093.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432784.10.0PREDICTED: transcription factor bHLH90-like
RefseqXP_018441640.10.0PREDICTED: transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A397YXG00.0A0A397YXG0_BRACM; Uncharacterized protein
STRINGBra019914.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein