PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00090.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 382aa    MW: 42075.5 Da    PI: 9.7045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00090.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-05313335123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C +C+ksF++   L  H r+H
  Rsa1.0_00090.1_g00024.1 313 HVCDICHKSFPTGQALGGHKRRH 335
                              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.7E-53358IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.38E-834101No hitNo description
SMARTSM003550.0333658IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-83658IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4893663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
PROSITE profilePS501578.51779101IPR007087Zinc finger, C2H2
SMARTSM003558.179101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
PfamPF139120.05881102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-5243266No hitNo description
PROSITE profilePS501578.995244271IPR007087Zinc finger, C2H2
SMARTSM003555.3244266IPR015880Zinc finger, C2H2-like
PfamPF139126.6E-10244268IPR007087Zinc finger, C2H2
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-5308335No hitNo description
PROSITE profilePS501579.12313335IPR007087Zinc finger, C2H2
SMARTSM003550.043313335IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-13313336IPR007087Zinc finger, C2H2
PROSITE patternPS000280315335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MWKKKKKKKK KKKKKKKKKK KKKKKKKKKE KKKKNHICSE CGKWFKSGKA LGGHKRIHVL  60
ENQKLSMVRP KMMSGETEVD CCVCHKKFIS MKALHGHMRF HPDRGWKGVL SHPLGNSSSS  120
TLSIDDYVGE FTSSDYDDDD DDDDDGYDNI DAKDQTDESN LKDNIDAKDL LLLATTAEAV  180
NLDVAESFDS PSVEEMMMNK KKRRLSEIKK VSSSSSTHDH HQLGDVVAAA AAEEGGGGGA  240
REKHVCVTCY KSFTSYQALG GHRASHNKVK ILENHQARAN SDALLLGTQA MITGLPSAQA  300
LNTSLSSSNN GDHVCDICHK SFPTGQALGG HKRRHWTGPV SSEAATSAST APAAGSSSQV  360
TEAVQEVNKF EFDLNELPPN EE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11933KKKKKKKKKKEKKKK
22033KKKKKKKKKEKKKK
32228KKKKKKK
42331KKKKKKEKK
52433KKKKKEKKKK
6199203KKKRR
7199204KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00090.1_g00024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411940.0AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474202.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A0D3B3871e-146A0A0D3B387_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AUP91e-146A0A3P6AUP9_BRAOL; Uncharacterized protein
STRINGBo3g021160.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-105C2H2 family protein