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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00087.1_g00115.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
NAC |
Protein Properties |
Length: 326aa MW: 36584 Da PI: 6.1789 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00087.1_g00115.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 175.9 | 1.2e-54 | 20 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrFhPtdee++++yLk+kv + ++++ +i +vd++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkat
Rsa1.0_00087.1_g00115.1 20 LPPGFRFHPTDEEIITHYLKEKVFNVQFTA-AAIGQVDLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATLSGYWKAT 104
79*************************999.78***************8888899******************************* PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
gkdke+++ kg vg+kktLvfy+grapkgekt+Wvmheyrl
Rsa1.0_00087.1_g00115.1 105 GKDKEIFRGKGCIVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 146
********99******************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MLEEVGVVVN QGGDHEAVDL PPGFRFHPTD EEIITHYLKE KVFNVQFTAA AIGQVDLNKN 60 EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATLSGY WKATGKDKEI FRGKGCIVGM 120 KKTLVFYRGR APKGEKTNWV MHEYRLDGKY SYQNLPRSAR DEWVVCRVFH KNAPPINTTT 180 TTSNQLIGSE SLDNIDHLLD FSALPPLIDP GFLVQPGPSF SVAGQQNNLN PILHHSTTVA 240 INSTYFPAKT VNYTYHSDPN CGSGFGYGTG SGNNNNGIKF EHSLMSVSQE TGLSSDMNTT 300 TSPEICNEMS NDDDDLGIFW DDYKLI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |