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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00087.1_g00114.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
NAC |
| Protein Properties |
Length: 357aa MW: 40858.8 Da PI: 7.0274 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00087.1_g00114.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 167.6 | 4.3e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrFhPtdeel+ +yL+kkv++ +++l +vi++vdiyk++PwdLp k+ +ekewyfFs+rd+ky++g r+nra++sgyWkat
Rsa1.0_00087.1_g00114.1 10 LPPGFRFHPTDEELILHYLRKKVSSLPVPL-SVIADVDIYKSDPWDLPDKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKAT 94
79****************************.99***************888899******************************** PP
NAM 87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
g+dk + + +e++g+kk Lvfy+g+ pkg kt+W+mheyrl
Rsa1.0_00087.1_g00114.1 95 GTDKLIAVPngegVHENIGVKKALVFYRGKPPKGIKTNWIMHEYRL 140
*******9955544455***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSLPVPLS VIADVDIYKS DPWDLPDKAP 60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNGEGVHE NIGVKKALVF 120
YRGKPPKGIK TNWIMHEYRL TETLSPKRAG SCRSDRQAAN FEDRGLKSKE DSMRLDDWVL 180
CRIYKKSHTS LSSPDVASAT SNEEYAENDK ESVLISETLL PNLENNQTLK RQKSSFSNLL 240
DATDLTFLTN FLNETPENHT EPEFSFMFEN FSNPNIYGNP YLDQKLPRLS PPSSETSFIG 300
NKRERMDYAE ETTNTSKKMI NNFSYNNSID HLDHSMVQQS SFLNHELLMS PRLPYQG
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 8e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
| 3swm_B | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
| 3swm_C | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
| 3swm_D | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
| 3swp_A | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
| 3swp_B | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
| 3swp_C | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
| 3swp_D | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
| 4dul_A | 8e-70 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
| 4dul_B | 8e-70 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
