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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00087.1_g00080.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 317aa MW: 35329.4 Da PI: 9.5849 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00087.1_g00080.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 97.3 | 1e-30 | 250 | 307 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+
Rsa1.0_00087.1_g00080.1 250 DEYTWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 307
9*************************988****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MEEVEAASKL AIESCHGVLR LFSQQQTSCD AKSLMVETRE AVSKFKRVAS LLTKWSSGHG 60 KFRRINNKFK PSFPQHIFLE STVCCCNDTD YTQVLAPEPL QMVPASVASY DEIDPRHQLS 120 HPLSQKMCAE KPFLELKPPP FLAPYQLIAY SRSNSGGVNL KFDGSGSSFY TPSASNGSRS 180 FVSSLSMDTS VVDYDGNSFQ LTGLSRKMCS GSLKCGSRSK CHCSKKRKLR VKRSIKVPAI 240 SNKIADIPPD EYTWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERCI DETSMLIVTY 300 EGEHNHSRIL SSQSAHT
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ210290 | 1e-180 | FJ210290.1 Brassica napus cultivar Westar WRKY transcription factor 39 (WRKY39) mRNA, complete cds. |