PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00087.1_g00044.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 381aa    MW: 43341.1 Da    PI: 7.9498
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00087.1_g00044.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.6e-10332378246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                              + W  eE e l ++vk++G+  Wk I +  +     Rt+ ++k++w++
  Rsa1.0_00087.1_g00044.1 332 NFWRLEEVEALREGVKKHGTS-WKYIKSLNPvvfAERTEVDLKDKWRN 378
                              67*****************99.************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.227326381IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-11327379IPR009057Homeodomain-like
SuperFamilySSF466893.43E-12327380IPR009057Homeodomain-like
PfamPF002492.6E-6334379IPR001005SANT/Myb domain
CDDcd116603.06E-14334381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVDMEAIDKW VAEFFIRRKT NPRVSPTNLL SALKLGDSPD DCSNLNLKKA SVLRQISDSL  60
IRGDVDEETL DLLETLEKLL LQGEGSVLTE SHKSAYCWTA VECAARFMWP LSASEGLYED  120
ALERIWTKRI RVLKGSRSGL VSGELLKWED DMRKAVEDAE VYMRIRESNV RYTAVCFLNR  180
LLEEQWAVLG GSSLESVAQR LMLLKRRDGG GGGGDDRDVH GVENDEQHGA EEEERTQEDE  240
PSLGKGDKVA ARDLKDYLLE IQRQIEPSTS TRQIPEPNTP QASRVNRTGT SSQASEKSWS  300
RVRPRLPTPV PPNVSPLNKK KKASPLPRRK KNFWRLEEVE ALREGVKKHG TSWKYIKSLN  360
PVVFAERTEV DLKDKWRNMN R
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00087.1_g00044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492408.10.0PREDICTED: uncharacterized protein LOC108862691
TrEMBLM4FEE91e-170M4FEE9_BRARP; Uncharacterized protein
STRINGBra039470.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-105MYB_related family protein