PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00079.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 249aa    MW: 28936.4 Da    PI: 10.3139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00079.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.1e-111722352791
                              ---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3  27 ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              ++++ es++ t+++ ++  sW+v +    + +r+v+++GW++ +++  Lk+gD ++F+l++ +ef 
  Rsa1.0_00079.1_g00010.1 172 DHIPSESMEYTINHsKRKSSWNVLC--LVRENRTVFSSGWSRLAREFPLKVGDRCTFRLIKPTEFI 235
                              3456788999999856779******..888888**************************9877774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0071154241IPR003340B3 DNA binding domain
PROSITE profilePS508639.319169242IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-12169237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-11169236IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-9173238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKSSLSPPG ERLRRRRIII TTSIAFWLRF CISFAICFIF VEGLGNMKKI GIDRGWEILR  60
STIYTDTCDL GSSSDDGLDN KVILEDNQIG ERERRRSSYD GCGEETWDRK IETTKKKAEA  120
SKTSSKKKKS KKVVKEVDES SRGRKKKAEK LKTFKKKEED QEKCCLRVFE KDHIPSESME  180
YTINHSKRKS SWNVLCLVRE NRTVFSSGWS RLAREFPLKV GDRCTFRLIK PTEFILITKK  240
ARKESTVVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126146KKKSKKVVKEVDESSRGRKKK
2142150GRKKKAEKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00079.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489745.13e-43PREDICTED: B3 domain-containing protein At3g17010-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2614722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.14e-26B3 family protein