PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00079.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 521aa    MW: 58972.7 Da    PI: 5.2777
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00079.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.64.2e-26194248155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k+r++W+ eLH++Fv+av+q+G  +kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Rsa1.0_00079.1_g00007.1 194 KARVVWSFELHQKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 248
                              68****************************************************8 PP
2Response_reg79.98.8e-27121181107
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge +
  Rsa1.0_00079.1_g00007.1  12 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALRLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEL-DLPVIMMSVDGETK 95 
                              89*********************.***************999999**********************5543.7************* PP

                              HHHHHHHTTESEEEESS--HHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeel 107
                               + + ++ Ga d+l Kp+ ++el
  Rsa1.0_00079.1_g00007.1  96 RVMKGVQHGACDYLLKPIRMKEL 118
                              ******************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.56E-359131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-439133No hitNo description
SMARTSM004481.6E-3110122IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.63111126IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-2412119IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.04E-3113126No hitNo description
Gene3DG3DSA:1.10.10.608.2E-28191253IPR009057Homeodomain-like
SuperFamilySSF466893.4E-16192252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22194248IPR006447Myb domain, plants
PfamPF002492.1E-7196247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDKGFSPVGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LAREALRLLR ERKDGYDIVI  60
SDVNMPDMDG FKLLEHVGLE LDLPVIMMSV DGETKRVMKG VQHGACDYLL KPIRMKELKI  120
IWQHVLRKKL QEVKDIEGCY DGGANWFTGN DETHYLGGGE DVSFGKKRKE FDFEKKLLLQ  180
DESDPSSSSS SSKKARVVWS FELHQKFVNA VNQIGCDHKA GPKKILDLMN VPWLTRENVA  240
SHLQKYRLYL SRLEKGKELK CYSGGVKNMD SPPKDSEFTS RHQSPGKNNS YAFSGGSYKA  300
ESDPKQLAAS SVSDPSSDVH TPPPKAKKTR IEFDPPISSS CAFDSLLPWE DVPDPLESKH  360
QILYQSSFLQ QQPLLPSQTP FVMEKEMKPS YETCVNADEF LMPQDENSTV ILQDLHLCAP  420
PSAMKLQESS SNVTNDTESI LRSLNWELPE SNHSGFIDTD LDFSWLHNEH FLANTSGNFQ  480
NFQFQDYSCS PSLPSELPPH LWFGNDPDEY TLMVDHGLFI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17190253163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00079.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446001.10.0PREDICTED: two-component response regulator ARR11
SwissprotQ9FXD60.0ARR11_ARATH; Two-component response regulator ARR11
TrEMBLM4CJ610.0M4CJ61_BRARP; Two-component response regulator
STRINGBra004245.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.10.0response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]