PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00076.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 236aa    MW: 25790.2 Da    PI: 4.7431
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00076.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.97.3e-43601591100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q
  Rsa1.0_00076.1_g00020.1  60 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQ 145
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+a+la+++ e
  Rsa1.0_00076.1_g00020.1 146 VSELQAQLAKTQVE 159
                              *********99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.32359160IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-4260157IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MLKLEINGGT SAATPTATSV AISAVKETTT PVNSPSPTSS PPSPPLSPQQ PPQSPVVLSP  60
CAACKILRRR CAEKCVLAPY FPPTDPAKFT IAHRVFGASN IIKFLQELPE SQRTDAVNSM  120
VYEAGARMRD PVYGCAGAIY HLQRQVSELQ AQLAKTQVEL VGMQLQRSDL LELLYKMEQT  180
KLAAQEQGQQ NMSFESSFES GDEFISSPDE VTNDLGFLEV NNNNNSSVSW WDPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-41521613112LOB family transfactor Ramosa2.1
5ly0_B2e-41521613112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00076.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738400.0AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478657.11e-176PREDICTED: LOB domain-containing protein 11
SwissprotQ9SK081e-131LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A291LQZ01e-142A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBLA0A397ZLR91e-142A0A397ZLR9_BRACM; Uncharacterized protein
STRINGBo4g165420.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-103LOB domain-containing protein 11