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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00076.1_g00020.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
LBD |
Protein Properties |
Length: 236aa MW: 25790.2 Da PI: 4.7431 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00076.1_g00020.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 136.9 | 7.3e-43 | 60 | 159 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q
Rsa1.0_00076.1_g00020.1 60 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQ 145
7************************************************************************************* PP
DUF260 87 leqlkaelallkee 100
+++l+a+la+++ e
Rsa1.0_00076.1_g00020.1 146 VSELQAQLAKTQVE 159
*********99865 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MLKLEINGGT SAATPTATSV AISAVKETTT PVNSPSPTSS PPSPPLSPQQ PPQSPVVLSP 60 CAACKILRRR CAEKCVLAPY FPPTDPAKFT IAHRVFGASN IIKFLQELPE SQRTDAVNSM 120 VYEAGARMRD PVYGCAGAIY HLQRQVSELQ AQLAKTQVEL VGMQLQRSDL LELLYKMEQT 180 KLAAQEQGQQ NMSFESSFES GDEFISSPDE VTNDLGFLEV NNNNNSSVSW WDPLWT
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB473840 | 0.0 | AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds. |