PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00076.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 284aa MW: 30700.3 Da PI: 7.5032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00076.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Rsa1.0_00076.1_g00001.1 115 YECKTCNRTFSSFQALGGHRASH 137 99**********99999998887 PP
2	zf-C2H2	12	0.00062	191	213	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Rsa1.0_00076.1_g00001.1 191 HECSICGSEFASGQALGGHMRRH 213 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.58E-8	114	137	No hit	No description
Pfam	PF13912	1.0E-12	114	139	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.97	115	142	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.063	115	137	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.58E-8	186	213	No hit	No description
Pfam	PF13912	1.8E-11	190	214	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.723	191	218	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	191	213	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MMSQDHHDVG SDQTQIIKGK RTKRQRSSSS AFFVAAAATT ITSTSSSAED GSGGRTVPDE 60 YNSAVSSPVT TTDCTEEEED MAVCLIMLAR GADLKNSRKN GKVLSSAENS SFFVYECKTC 120 NRTFSSFQAL GGHRASHKKP RASIEEKTKL PLMLTKSSGL VEGQKGNFRV FGSALASQSS 180 NIIIAKANKV HECSICGSEF ASGQALGGHM RRHRTATTAV IPVATMEVSR NSTEDETENL 240 SSSIEQRKYL PLDLNLPAPD DDLRESKFQG IVFSTTPALI DCHY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00076.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633836.1	1e-162	PREDICTED: zinc finger protein ZAT5-like
Swissprot	Q681X4	1e-139	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A0D3C2I6	1e-161	A0A0D3C2I6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6CTM2	1e-161	A0A3P6CTM2_BRAOL; Uncharacterized protein
STRING	Bo4g165160.1	1e-161	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-113	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]