 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_00073.1_g00025.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 339aa MW: 39140.5 Da PI: 9.7584 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00073.1_g00025.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 66.7 | 2.3e-21 | 6 | 55 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+++++s + +++ +R+++i KKA+ELS+LC + v+vi+++++g+l+++++
Rsa1.0_00073.1_g00025.1 6 SSSSNSLAATSLNNRLKTIYKKASELSILCRVAVSVIYYGPNGELKTWPK 55
789999******************************************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MRASSSSSSN SLAATSLNNR LKTIYKKASE LSILCRVAVS VIYYGPNGEL KTWPKEKEVV 60
KDMALKYKAA TKRKNSYNLR DFLEGKLDND KNLKDNKKKK KKTKREFENV KYPEWYPALD 120
HYSPDQLRQL ILSLQGTLSS MEERIRVLQV QKQKSTNLVH QNLTKHRHDH YQTVQPLNSS 180
QCSLYLYNHD DATLSELPLS AAHSNQLINY QNYLRMQQQK HYDPCVANTQ DHPALLSVQE 240
SRLKNQFMKQ QERNMCMMNN TSNSNVLLHP CPLNTIPKEL SFDLQKNPKD DMVGRHKFSQ 300
DFPNLFLAYA DSPQLQTSLP SIHQTIPNIN LIPDNSSCL
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 96 | 104 | KKKKKKTKR |
