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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00073.1_g00023.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HD-ZIP |
Protein Properties |
Length: 312aa MW: 34563.4 Da PI: 4.6341 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00073.1_g00023.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.1 | 7.3e-19 | 72 | 125 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k
Rsa1.0_00073.1_g00023.1 72 KKRRLSVTQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125
5668999**********************************************9 PP
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2 | HD-ZIP_I/II | 128.4 | 2.9e-41 | 71 | 163 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
ekkrrls qvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++d+lk+++++L++++++
Rsa1.0_00073.1_g00023.1 71 EKKRRLSVTQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDSLKRSRDSLQRDNDS 156
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelke 93
L +e+ke
Rsa1.0_00073.1_g00023.1 157 LLAEIKE 163
**99987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MKRSRGSSDS LSGFLPICHS TSDKQLSPRP TATGFLYPGA GDYSQMFDGL EEDGSLEDIG 60 VGHASSTAAA EKKRRLSVTQ VKALEKNFEI DNKLEPERKV KLAQELGLQP RQVAIWFQNR 120 RARWKTKQLE RDYGVLKSNF DSLKRSRDSL QRDNDSLLAE IKELRAKLDG EGTGVNNGNA 180 VTEETGVVKV LETVAYQTVI ANNEVLELSQ RPPPHIPTEA QASELAYEMF SIFPRTESFR 240 EDPADSSDSS AVLNEDYSPT AAAAAAAVEM STMGCFGQFV KMEEHEDLFS GEEACKLFAD 300 NEQWFCSGQW SS
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 119 | 127 | RRARWKTKQ |
2 | 140 | 145 | DSLKRS |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK353247 | 0.0 | AK353247.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-D07. |