PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00073.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 272aa    MW: 31176.3 Da    PI: 7.1313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00073.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-19103152356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+ Vr+++ +g+WvAeIr p++   r+r +lg+f t+eeAa a+++a+++++ge
  Rsa1.0_00073.1_g00007.1 103 YRCVRQRH-WGKWVAEIRLPKT---RTRLWLGTFETEEEAALAYDQAARRIRGE 152
                              9******9.**********965...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.19E-33101161No hitNo description
PROSITE profilePS5103221.773102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-31102160IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-20102160IPR016177DNA-binding domain
SMARTSM003805.8E-36102165IPR001471AP2/ERF domain
PRINTSPR003674.1E-9103114IPR001471AP2/ERF domain
PfamPF008475.1E-13103152IPR001471AP2/ERF domain
PRINTSPR003674.1E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEIALNMNGC KEEFMQALEP FMKVTSSSSF PSSSKQEPLT PNNQTGPIGL NQLTPTQILQ  60
IQRELHLRQN QARRRGSAHN LHLLNAKPTL MKKTDVSKPV KLYRCVRQRH WGKWVAEIRL  120
PKTRTRLWLG TFETEEEAAL AYDQAARRIR GENARLNFPN NGEYKQTLSP TVNAKIESIF  180
NTSDLPLHEL KKPAKTEEEF FGFHYTGPTP DREREFSDMF GYGFGSSLES DITLLDLSSE  240
WVKEDESFCM GLQKYPSFEI DWDAIDKLSG SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19101163470ATERF1
3gcc_A3e-19101163470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00073.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438564.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
RefseqXP_018438565.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-122ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A078HAW41e-167A0A078HAW4_BRANA; BnaC02g43540D protein
STRINGBo00615s260.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-124ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]