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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00071.1_g00058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 25584 Da PI: 7.587 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksFs+ L H +H Rsa1.0_00071.1_g00058.1 91 YKCTVCGKSFSSYQALGGHKTSH 113 9***********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.05E-9 | 90 | 113 | No hit | No description |
Pfam | PF13912 | 2.1E-13 | 91 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.094 | 91 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-5 | 91 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.05E-9 | 147 | 174 | No hit | No description |
Pfam | PF13912 | 2.0E-10 | 152 | 176 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.82 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MALETLNSPT SATATARPFL RYREEMEPEN LEQWAKRKRT KRQRFDQTHH NQETTPSEEE 60 YLALCLLMLA RGSAVQSPLP PSLPSSAHRG YKCTVCGKSF SSYQALGGHK TSHRKPVNNT 120 DNVLSNQEPF NNNTHRNSNG GSVVISQSGK SHTCSICFKS FSSGQALGGH KRCHYDGGNN 180 GNGNGSSSNS SVEVVGGSDV SDVDDERSSE EQSATIGGHR GFDLNLPADQ VTVVIT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00118 | ampDAP | Transfer from AT5G67450 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00071.1_g00058.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189526 | 0.0 | AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018454709.1 | 1e-177 | PREDICTED: zinc finger protein AZF1-like | ||||
Swissprot | Q9SSW1 | 1e-103 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | A0A397XRZ9 | 1e-129 | A0A397XRZ9_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5XVL4 | 1e-129 | A0A3P5XVL4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F9T1 | 1e-129 | M4F9T1_BRARP; Uncharacterized protein | ||||
STRING | Bra037845.1-P | 1e-130 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3121 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 3e-91 | zinc-finger protein 1 |
Publications ? help Back to Top | |||
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