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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00071.1_g00029.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 166aa MW: 18712.6 Da PI: 7.2712 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00071.1_g00029.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 85.7 | 4.3e-27 | 74 | 132 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+dDgy+WrKYG+K+vk++ + r+YY+C+s+gC+vkk+ver+ +d +v++tYe+ Hnhe
Rsa1.0_00071.1_g00029.1 74 MDDGYKWRKYGKKSVKNNINKRNYYKCSSEGCMVKKRVERDGKDAAYVITTYEEVHNHE 132
69********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 166 aa
Download sequence Send
to blast |
MFDDDEGGNT GLVQEETSPP ASIVSSETLT GESRGSGRAL TTLSKKESTG SKDGETKEPG 60 HRVAFRTRSK IDVMDDGYKW RKYGKKSVKN NINKRNYYKC SSEGCMVKKR VERDGKDAAY 120 VITTYEEVHN HEIPSHVYYN DMVSSHDHDN WNQHSLLQSI HISPPS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493813 | 1e-119 | AB493813.1 Arabidopsis thaliana At5g64810 mRNA for hypothetical protein, partial cds, clone: RAAt5g64810. |
GenBank | AF426252 | 1e-119 | AF426252.1 Arabidopsis thaliana WRKY transcription factor 51 (WRKY51) mRNA, complete cds. |
GenBank | BT025755 | 1e-119 | BT025755.1 Arabidopsis thaliana At5g64810 mRNA, complete cds. |