PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00070.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 352aa    MW: 38529.3 Da    PI: 10.2481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00070.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31283341259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  Rsa1.0_00070.1_g00022.1 283 SDEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERAPDDAMMLIVTYEGDHNHA 341
                              69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.5E-17243280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.6E-33270342IPR003657WRKY domain
PROSITE profilePS5081129.895277343IPR003657WRKY domain
SuperFamilySSF1182909.68E-26280341IPR003657WRKY domain
SMARTSM007741.2E-37282342IPR003657WRKY domain
PfamPF031061.7E-26284340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTVELIMSSS SYGAGRVKRE EDGGFSAGKE DTALKEAASE GIHGVQEFLK LIGQSQQTEE  60
KQTEITAVTD VAVNSFKKVI SLLGRSTTGH ARFRRGPVTT PKTEDGGGAV KTEEEKPRTT  120
TTTTTTVVLN REKTEKYGGS AFRVYCPTPI HRRPPLSHNH TQTKNGSSSS APLLPNGRPH  180
QEPPSSTIHF APSPPVSATN SFMSSHRCET ESNQMSSGFE FTNPSSQFSG SRGKPPLSSA  240
SLKRKCSSTT PSGRCHCTKK RKSRVKRVIR VPAVSSKMAD IPSDEFSWRK YGQKPIKGSP  300
HPRGYYKCSS MRGCPARKHV ERAPDDAMML IVTYEGDHNH AMVLETHHDK TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22270342273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242261KRKCSSTTPSGRCHCTKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00070.1_g00022.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841120.0FJ384112.1 Brassica napus cultivar Westar WRKY transcription factor 7 (WRKY7) mRNA, WRKY7-2 allele, complete cds.
GenBankKM5931540.0KM593154.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485299.10.0PREDICTED: probable WRKY transcription factor 7
RefseqXP_018485306.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-174WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0A7RCL10.0A0A0A7RCL1_BRAOC; WRKY79 protein
STRINGBra019239.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-163WRKY DNA-binding protein 7