PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 1061aa MW: 119200 Da PI: 8.273

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00062.1_g00027.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.9e-18	28	79	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++q+++Le++F+++++p+ ++r +L ++l+L+ +q+k+WFqN+R++ k Rsa1.0_00062.1_g00027.1 28 HRHSTYQIQRLEAYFKECPHPDDSQRHKLGEELKLKPKQIKFWFQNKRTQAK 79 67899********************************************988 PP
2	START	128.8	6.7e-41	231	451	2	206
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla. 77 ++ +a +e ++++ +ep+W kss ++en++++ +k++ k+ ++e +++++vv+m++ +lv +ld+ +W + + Rsa1.0_00062.1_g00027.1 231 MMVSAVTEIIRLIHTKEPMWIKSSiddrlviDQENYEKSFTKISHLKSpsTRIESSKEVVVVPMDARNLVDMFLDTE-KWARLFSt 315 5678999**********************************88888999**********************.77777766 PP ...EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS START 78 ...kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154 +a+t+ v+++ ++ qlm+ +l lsplvp R+f+++R+++q +++ wvi+dvS + + e + + ++pSg+li Rsa1.0_00062.1_g00027.1 316 ivnEAKTIHVLEPMdtqrqNFSQLMYEQLHILSPLVPpREFMILRCCQQIEEDLWVIADVSCHHVNIDFE---SPTCSKRPSGCLI 398 666***9998899******************************************9998764...566888*** PP EEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 + ++ng skvtw+ehv++++++ h ++r l+ g ga++w+ tl+r ce+ Rsa1.0_00062.1_g00027.1 399 QALPNGLSKVTWMEHVEVNDKVRtHRIYRDLLCGGFGYGARRWTVTLERMCER 451 ******************99*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-16	7	80	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-17	14	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.337	21	81	IPR001356	Homeobox domain
SMART	SM00389	1.8E-15	23	85	IPR001356	Homeobox domain
CDD	cd00086	9.53E-15	28	81	No hit	No description
Pfam	PF00046	1.6E-15	28	79	IPR001356	Homeobox domain
PROSITE profile	PS50848	41.168	221	454	IPR002913	START domain
SuperFamily	SSF55961	5.63E-29	222	452	No hit	No description
CDD	cd08875	1.21E-91	225	450	No hit	No description
SMART	SM00234	1.9E-26	230	451	IPR002913	START domain
Pfam	PF01852	1.1E-33	232	451	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	5.3E-8	270	416	IPR023393	START-like domain
SuperFamily	SSF55961	5.63E-8	474	678	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence Send to blast
MEFNHDSSSS NGLETSMNTT NGDNKIYHRH STYQIQRLEA YFKECPHPDD SQRHKLGEEL 60 KLKPKQIKFW FQNKRTQAKT QIEKAINTSL RAENIRIRRE NEVMQEALKT VTCPPCGGPR 120 LGKEERQLYL QKLHAHNAYL KGQREQILDF VNNNGGHSIP SVNSLAYRQG PSSYASTSSN 180 PHVSYGTSSN HPVQPPSLER EPYTREHLNI AQQPQHFQPL SQMEKMIMSE MMVSAVTEII 240 RLIHTKEPMW IKSSIDDRLV IDQENYEKSF TKISHLKSPS TRIESSKEVV VVPMDARNLV 300 DMFLDTEKWA RLFSTIVNEA KTIHVLEPMD TQRQNFSQLM YEQLHILSPL VPPREFMILR 360 CCQQIEEDLW VIADVSCHHV NIDFESPTCS KRPSGCLIQA LPNGLSKVTW MEHVEVNDKV 420 RTHRIYRDLL CGGFGYGARR WTVTLERMCE RLSLSSISVF LTTDYAGVVK TIEGRRSVVN 480 LGERMLKNFA WILKMSGNYD FSQLSETNSS GVRVSVRVNS EAGQPTGLIV CAASSLCLPL 540 SPLQVYNFLT NLEIRHQWDV LCLGNPAAEV TGFVTGTDDK NRVNILQPRS ATENADMMII 600 QDSFIDALGG MVVYAPVDLK TAYAAVSGQV NPLAIPILPS GFIISHGGHR STSSELEDGN 660 DYSTTLLTVA FQILVSGPTL SGGGYGLPQA HFRALESSIS SIRQLRFLRF LFMQSLTTLS 720 MSHHISEGSG WSFRPGFDST WPPGLALNRK NTWVAVGLRG ISLGPRKPLD HPLAESKQNF 780 RRKIKHSGFD RTASSFSSGP LDTPPPVSRF SSISNSNKQS IETLSEAFVS STLYKVQEKR 840 AGVPVYSRLY ESLYPIYMLN LATRHRFPCT GIEIIGVCLA ARNIKQLEIS YRIRTRGICF 900 TRICEESTLT RLGGISLGST ARPRAGHGKE FTYIKEGGTD RNGDPNIHTH IRRLETKRLS 960 EDISSLEKCL DQSMDKSIEK LVDLGNHAYQ VAPLSSNVTQ SLQEIERKLV SVVVDNLKNM 1020 QTIVLEEFTD MIDKSKHSEG SADQTADGDG GMNRQSDSHI K

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence Send to blast

MEFNHDSSSS NGLETSMNTT NGDNKIYHRH STYQIQRLEA YFKECPHPDD SQRHKLGEEL  60
KLKPKQIKFW FQNKRTQAKT QIEKAINTSL RAENIRIRRE NEVMQEALKT VTCPPCGGPR  120
LGKEERQLYL QKLHAHNAYL KGQREQILDF VNNNGGHSIP SVNSLAYRQG PSSYASTSSN  180
PHVSYGTSSN HPVQPPSLER EPYTREHLNI AQQPQHFQPL SQMEKMIMSE MMVSAVTEII  240
RLIHTKEPMW IKSSIDDRLV IDQENYEKSF TKISHLKSPS TRIESSKEVV VVPMDARNLV  300
DMFLDTEKWA RLFSTIVNEA KTIHVLEPMD TQRQNFSQLM YEQLHILSPL VPPREFMILR  360
CCQQIEEDLW VIADVSCHHV NIDFESPTCS KRPSGCLIQA LPNGLSKVTW MEHVEVNDKV  420
RTHRIYRDLL CGGFGYGARR WTVTLERMCE RLSLSSISVF LTTDYAGVVK TIEGRRSVVN  480
LGERMLKNFA WILKMSGNYD FSQLSETNSS GVRVSVRVNS EAGQPTGLIV CAASSLCLPL  540
SPLQVYNFLT NLEIRHQWDV LCLGNPAAEV TGFVTGTDDK NRVNILQPRS ATENADMMII  600
QDSFIDALGG MVVYAPVDLK TAYAAVSGQV NPLAIPILPS GFIISHGGHR STSSELEDGN  660
DYSTTLLTVA FQILVSGPTL SGGGYGLPQA HFRALESSIS SIRQLRFLRF LFMQSLTTLS  720
MSHHISEGSG WSFRPGFDST WPPGLALNRK NTWVAVGLRG ISLGPRKPLD HPLAESKQNF  780
RRKIKHSGFD RTASSFSSGP LDTPPPVSRF SSISNSNKQS IETLSEAFVS STLYKVQEKR  840
AGVPVYSRLY ESLYPIYMLN LATRHRFPCT GIEIIGVCLA ARNIKQLEIS YRIRTRGICF  900
TRICEESTLT RLGGISLGST ARPRAGHGKE FTYIKEGGTD RNGDPNIHTH IRRLETKRLS  960
EDISSLEKCL DQSMDKSIEK LVDLGNHAYQ VAPLSSNVTQ SLQEIERKLV SVVVDNLKNM  1020
QTIVLEEFTD MIDKSKHSEG SADQTADGDG GMNRQSDSHI K

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269\|PubMed:16778018}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00062.1_g00027.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619236.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG9-like
Refseq	XP_022551076.1	0.0	homeobox-leucine zipper protein HDG9-like isoform X1
Swissprot	Q9FFI0	0.0	HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBL	A0A3N6R7D8	0.0	A0A3N6R7D8_BRACR; Uncharacterized protein
STRING	Bo2g013570.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8468	15	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34650.1	0.0	homeodomain GLABROUS 10

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]