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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00061.1_g00027.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 488aa MW: 53758.4 Da PI: 6.6121 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00061.1_g00027.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 98.5 | 4.2e-31 | 236 | 295 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
Rsa1.0_00061.1_g00027.1 236 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 295
58*********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 488 aa
Download sequence Send
to blast |
MEEHSQDARE IAFLHSGDFL QRDSTLKDHQ PNESSVEHHH KPSIKEVDFF AVKSQPYDPS 60 QMRTTIVGSS GFNDELGPMN SCLRTSSDDG NNDKTKAQIS RLRLELERLH EENHKLKNLF 120 DEISESYNDL RSKVLLARPT QVEGLQQHED IPQAVSSQAL EDRKPTDMNN DIPATTLKRR 180 SPDDVDDRDL HRDSPKTPRL YQNKSTNHEE QQNHQDQLPF RKARVSVRAR SDATTVNDGC 240 QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRCAED TTILTTTYEG NHNHPLPPSA 300 TAMAATTSAA AAMLLSGSTT SNLHQTLSYP SAMSSSSSLY QNFPYTSTIA TLSATAPFPT 360 ITLDLTNPPR PLQPPPPPHF MSQYGPGEYL TNANQTRSIN DNYSQLLLPN LSGPQVPPRD 420 MVDTVRAAIA TDPNFTAALA AAISNIIGGG NENTINNNGN SKVDAKSGGS SNGDSPPLPQ 480 SCTTFSTT
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF430058 | 0.0 | KF430058.1 Brassica rapa WRKY transcription factor 47 (WRKY47) mRNA, complete cds. |