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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00060.1_g00024.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
ERF |
Protein Properties |
Length: 262aa MW: 29348.5 Da PI: 4.8043 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00060.1_g00024.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 79 | 130 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
s y+G+r+++ +grW+AeIrdp + r++lg+f tae+Aa+a++ +k+++g+
Rsa1.0_00060.1_g00024.1 79 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 130
569*******.**********72....46*************************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MCGGAVISEY ITPSRSGRSS ASKSSSWRRD DVVVDLTLDD FEGEFESENE EFYGFSTAKP 60 ARGFIEEDAR KNKKKKKSSE YRGIRRRPWG RWAAEIRDPI KGVRVWLGTF NTAEDAARAY 120 DLEAKRIRGA KAKLNFPNES PSRKRKASSS SSKQPPQVKV EEKREEVAVA CSSLWEGDTI 180 QVDTQWLEEA IKGGEKRQKG CDGDGEGDDV NAQLSEELLA FEKETECFFQ MPFMEGGNCG 240 SSSSSTPMTS VFEGDDVLDL WY
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 72 | 87 | KKKKKSSEYRGIRRRP |
Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189575 | 1e-158 | AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence. |