PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00057.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 417aa MW: 48073.9 Da PI: 8.9104

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00057.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	90	137	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r h + Er RR++ ++++ L +llP a +K +K +i+ekAv+ I++L+ Rsa1.0_00057.1_g00002.1 90 RQHMMKERTRREKQKQSYLALHSLLPFA-----TKSNKNSIVEKAVDQIRKLE 137 6799**********************.....9**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-11	85	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.97E-9	85	141	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.0E-8	86	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.294	87	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	90	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-6	93	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd06222	4.76E-14	275	391	No hit	No description
Pfam	PF13456	1.3E-9	275	393	No hit	No description
SuperFamily	SSF53098	8.35E-8	275	396	IPR012337	Ribonuclease H-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0003676	Molecular Function	nucleic acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MDFFSLDSVF QEEGEKFWNM IAGEVSGDGD GDRTVSVLNR SAFRSYVRDN EQRMVSSSST 60 VNVKKRMVNL LRKNWEKKKI VAVPENERSR QHMMKERTRR EKQKQSYLAL HSLLPFATKS 120 NKNSIVEKAV DQIRKLEGLK KELERRMNVL EAKSARDHDE MNGTKVRFNI QEPLSGIDSI 180 VEVLQCLKSM GTNLNTVQAN FSPHEFSATM NIETQKARND KLFRRIDRDP LELVRYVESE 240 CQVWFNTNEM IPPVVQESNV EEPQVISLGN ICLLDGSWTS HAQFSGCGWV WLNSGGKTQL 300 MGSQNFSRRK SALHSEVEAL RWVMENMLQH STCQNFGTDC KELIAMIKEP HAWTSFATEL 360 ERIETLLICF LDFKISYVPR ARNQISDFLA KTARSFHRKL HFTGCSIPVW LSRPPQA

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MDFFSLDSVF QEEGEKFWNM IAGEVSGDGD GDRTVSVLNR SAFRSYVRDN EQRMVSSSST  60
VNVKKRMVNL LRKNWEKKKI VAVPENERSR QHMMKERTRR EKQKQSYLAL HSLLPFATKS  120
NKNSIVEKAV DQIRKLEGLK KELERRMNVL EAKSARDHDE MNGTKVRFNI QEPLSGIDSI  180
VEVLQCLKSM GTNLNTVQAN FSPHEFSATM NIETQKARND KLFRRIDRDP LELVRYVESE  240
CQVWFNTNEM IPPVVQESNV EEPQVISLGN ICLLDGSWTS HAQFSGCGWV WLNSGGKTQL  300
MGSQNFSRRK SALHSEVEAL RWVMENMLQH STCQNFGTDC KELIAMIKEP HAWTSFATEL  360
ERIETLLICF LDFKISYVPR ARNQISDFLA KTARSFHRKL HFTGCSIPVW LSRPPQA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00057.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189402	1e-143	AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
GenBank	AC189591	1e-143	AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018467064.1	1e-152	PREDICTED: transcription factor bHLH92-like
Swissprot	Q9FIX5	4e-94	BH092_ARATH; Transcription factor bHLH92
TrEMBL	A0A0D3D8P7	1e-125	A0A0D3D8P7_BRAOL; Uncharacterized protein
STRING	Bo7g065640.1	1e-126	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-96	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]