PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 185aa MW: 20536.2 Da PI: 8.862

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00051.1_g00025.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.5	4e-19	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ ++g Rsa1.0_00051.1_g00025.1 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFNTAEEAARAYDQAAVLMNG 55 59***999.******8.....334*******************977765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.68E-33	5	64	No hit	No description
SuperFamily	SSF54171	1.96E-20	6	64	IPR016177	DNA-binding domain
SMART	SM00380	5.0E-39	6	69	IPR001471	AP2/ERF domain
Pfam	PF00847	7.3E-12	6	51	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.746	6	63	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-32	6	63	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MVSSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFNTAE EAARAYDQAA VLMNGQNAKT 60 NFPVIKSNGS VSPDVNSPLS ELLNAKLRKN CKDQTPYLTC LRLDNDSSHI GVWQKRAGSS 120 SSQNWVKLVE LGDSVNASAG DAGSDKMKKG NDDVEEEDQM AMQMIEELLN WTCPASASIS 180 GKIFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	6	70	14	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00527	DAP	Transfer from AT5G25390	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00051.1_g00025.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189321	0.0	AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455155.1	1e-135	PREDICTED: ethylene-responsive transcription factor SHINE 3-like
Swissprot	Q3E958	1e-107	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A3P6E6U0	1e-125	A0A3P6E6U0_BRAOL; Uncharacterized protein
STRING	Bo9g011380.1	1e-126	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM834	28	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	1e-100	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]