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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00051.1_g00009.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
CO-like |
Protein Properties |
Length: 348aa MW: 37611.9 Da PI: 6.4151 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00051.1_g00009.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 22 | 3.5e-07 | 4 | 36 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
+ C+ +++ + l+C+ + +lC +C ++ H
Rsa1.0_00051.1_g00009.1 4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
58***************************9955 PP
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2 | zf-B_box | 27.9 | 4.9e-09 | 46 | 91 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
++C+ +e+ +++ C+ + lC +C +H+ H++vp+
Rsa1.0_00051.1_g00009.1 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPI 91
689*****************************66899999*99997 PP
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3 | CCT | 70 | 5.8e-24 | 280 | 323 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
Rsa1.0_00051.1_g00009.1 280 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 323
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKVA SRHARVWMCE VCEQAPAHVT 60 CKADAAALCV TCDRDIHSAN PLARRHERVP ITPFYDPVSG ADGSGKHTAV NFLNDCYFAD 120 LDGNASREEE EEEAASWLLP NPKTAAPAVP GDSPEMNTGQ QFLFPDLDLD YGTVDPKLES 180 REQNSSGADG VVPVETRTVR VPTVNENCYE LDFTGGSKSF TTYGHNCVSH SVSSSSLEVG 240 VVPDGGSVAD VSYPYGGPAT SGTGIDSGTQ RAVPLTSAER EARVMRYREK RKNRKFEKTI 300 RYASRKAYAE MRPRIKGRFA KRTDTSESND VVVGHGGMFS GFGLVPTF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KU949786 | 0.0 | KU949786.1 Raphanus sativus var. raphanistroides isolate Rs-2 CONSTANS-like zinc finger protein 4 (COL4) gene, partial cds. |