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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00050.1_g00039.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
CO-like |
Protein Properties |
Length: 414aa MW: 46403.8 Da PI: 5.0437 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00050.1_g00039.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 28.3 | 3.7e-09 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + +k+++++C ++ +lC++C + H+ H++v
Rsa1.0_00050.1_g00039.1 13 ARACDSCVKKRARWYCAADDAFLCQSCDTLVHSAnplarrHERV 56
578*****************************657888888876 PP
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2 | CCT | 68.1 | 2.4e-23 | 356 | 399 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
Rsa1.0_00050.1_g00039.1 356 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 399
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MKSVANAVGA KTARACDSCV KKRARWYCAA DDAFLCQSCD TLVHSANPLA RRHERVRLKS 60 ASPAVSKYTN HNHSPSSPPH EAATWHQGFT RKPRTPRGSG KKNNLSIFHD LVPEISAEDQ 120 TDSYEIEEQL ICQVPVLDPM VAEQFLNDVV EPKIEFPLMR IDDQENEDNA ESCLNGFFPT 180 DMELEEFAAD VETLLGHGLD VTESYAMEGL GLSNTEMFKI EKDEIEEDEG EETKAMNMGI 240 GCGEDRDDGD GTVAFELRFD HESHNTYEEE AIKNVECIKV KEEEQKNVLM LSLNYDSVIS 300 TWGGQGPPWT SGEPPERDID ISDKPVVSME INGGESHHKH YVGGCLPSTG FGDGGREARV 360 SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRAS LALSAANSPL GVNY
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 366 | 382 | RRTRLFSKKIRYEVRKL |