PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00050.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 382aa    MW: 43610.5 Da    PI: 8.7507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00050.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-065981123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C++C++ F r  nL+ H r+H
  Rsa1.0_00050.1_g00021.1 59 YVCEICNQGFQRDQNLQMHRRRH 81
                             9*********************9 PP
2zf-C2H214.88.5e-05138160123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C+k +  +s++k H++t+
  Rsa1.0_00050.1_g00021.1 138 WVCERCSKGYAVQSDYKAHLKTC 160
                              58*******************98 PP
3zf-C2H211.20.0012168186523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              dCg++Fsr +++  H+ t+
  Rsa1.0_00050.1_g00021.1 168 DCGRVFSRVESFIEHQDTC 186
                              9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-55881No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355210102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4129159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.19E-5133158No hitNo description
SMARTSM0035594138165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MIDYERNNNH VSSSSSDLLL AINETPVNNK RKRRPAGTPD PDAEVVSLSP RTLLESDRYV  60
CEICNQGFQR DQNLQMHRRR HKVPWKLLKR EKKDEEVRKR VYVCPEQTCL HHDPCHALGD  120
LVGIKKHFRR KHSAIKQWVC ERCSKGYAVQ SDYKAHLKTC GSRGHSCDCG RVFSRVESFI  180
EHQDTCNIRR PQPTNPPRPL QQNISGHSTP SRTFSTTSIG PSLHGLPMLR PPQASHQQSL  240
AFSYPVDASS SPFESLQLQL SIGMAKTSSN MKRNEKEEMS VALTANEEAR RADEMRQEAK  300
RQIEMAEMDL ERAKNIRKQA EAELEKAQFV REEAMKRINA TMLELTCRSC KQLFQLPVMA  360
DESKTSLVMS YVSSATTEGE CE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17136187556Zinc finger protein JACKDAW
5b3h_F2e-17136187556Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00050.1_g00021.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482205.10.0PREDICTED: protein indeterminate-domain 16-like
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLA0A3P5Y3300.0A0A3P5Y330_BRACM; Uncharacterized protein
STRINGBo5g043540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.10.0indeterminate(ID)-domain 16
Publications ? help Back to Top
  1. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]