PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 302aa MW: 33579.6 Da PI: 9.8526

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00046.1_g00028.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.9	7.3e-33	146	201	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF Rsa1.0_00046.1_g00028.1 146 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 201 9**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.8E-38	143	204	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.879	144	204	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.3E-27	146	201	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.4E-24	147	169	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	149	169	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.4E-24	178	201	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MSKKGSSLPY LNTSIAWGVL PTEPLNLKTV DARPGHMHTT KQISFQDQDS PSTQSTCQSY 60 TEVASSGDDN PSRQISFSTK SGSEMTSFPN MNFAPTQANF SFHYADPHYG GLLATTYLPQ 120 APTCNPQMVG MVPGRVQLPV EITETEPVFV NAKQYHAIMR RRQQRAKLEA QNKLIKARKP 180 YLHESRHVHA LKRPRGSGGR FLNTKKLLQE SQQAAPKQQE HDKRTNMSRF QAHMLHHNKD 240 RGSTTSGSDI TCVSDGAADI FGHTELQFSG FPTTQTNRAM LVHGQSNDMH GGGDLHHFSV 300 HI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-20	146	205	3	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00046.1_g00028.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189507	1e-124	AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBank	AC189607	1e-124	AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452558.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3-like
Swissprot	Q93ZH2	1e-176	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A0D3D079	0.0	A0A0D3D079_BRAOL; Uncharacterized protein
STRING	Bo6g116250.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3349	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-179	nuclear factor Y, subunit A3