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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00045.1_g00059.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bZIP |
Protein Properties |
Length: 140aa MW: 16139 Da PI: 10.0197 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00045.1_g00059.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 25.2 | 3.7e-08 | 15 | 81 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKka.......eieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
k+ +rk +NRe+ArrsR++K++ ei Le+++ke ++ k + +l++l+ e a+l+se+
Rsa1.0_00045.1_g00059.1 15 EKKRKRKLSNRESARRSRLKKQKmmedtihEISTLERRIKEYSERCKVARRRLDSLESENAALRSEK 81
5999******************83333333456799999999999999999********99999986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006521 | Biological Process | regulation of cellular amino acid metabolic process |
GO:0009267 | Biological Process | cellular response to starvation |
GO:0009617 | Biological Process | response to bacterium |
GO:0009651 | Biological Process | response to salt stress |
GO:0009901 | Biological Process | anther dehiscence |
GO:0010182 | Biological Process | sugar mediated signaling pathway |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0071333 | Biological Process | cellular response to glucose stimulus |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 140 aa
Download sequence Send
to blast |
MANAEKTSSG SDIDEKKRKR KLSNRESARR SRLKKQKMME DTIHEISTLE RRIKEYSERC 60 KVARRRLDSL ESENAALRSE KTWLSSYVRD LENMMATSTS LTLTQSGGDD QNANADGDCR 120 RRPWQQYGCD SLQPVASFKT
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 14 | 21 | EKKRKRKL |
2 | 15 | 20 | KKRKRK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response (PubMed:20080816, PubMed:21278122). Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter (PubMed:24243147). {ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:24243147}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Reversibly repressed by glucose and mannose. Slowly induced by Pseudomonas syringae. Induced in roots upon cold and salt stress but then repressed in leaves. Promoted by low energy stress and dark-induced starvation. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK352759 | 1e-114 | AK352759.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-E19. |
Publications
? help Back to Top |
- Mair A, et al.
SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] - Doidy J, et al.
"Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062] - Dash M, et al.
Poplar PtabZIP1-like enhances lateral root formation and biomass growth under drought stress. Plant J., 2017. 89(4): p. 692-705 [PMID:27813246] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] - Lee DH,Park SJ,Ahn CS,Pai HS
MRF Family Genes Are Involved in Translation Control, Especially under Energy-Deficient Conditions, and Their Expression and Functions Are Modulated by the TOR Signaling Pathway. Plant Cell, 2017. 29(11): p. 2895-2920 [PMID:29084871] - Pedrotti L, et al.
Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240] - Para A,Li Y,Coruzzi GM
μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts. Methods Mol. Biol., 2018. 1761: p. 249-261 [PMID:29525963]
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