PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00045.1_g00051.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 382aa MW: 42568.7 Da PI: 6.8939

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00045.1_g00051.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.5	5.5e-33	206	264	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp +v +tYeg+H+h+ Rsa1.0_00045.1_g00051.1 206 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPYIVMTTYEGQHTHP 264 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.9E-34	191	266	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-30	198	266	IPR003657	WRKY domain
PROSITE profile	PS50811	32.73	201	266	IPR003657	WRKY domain
SMART	SM00774	3.2E-39	206	265	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	207	264	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEQLNSTKNT ETKIQHQEDQ QQQMFQATTS SHMANLDTSS DHHHQLELAG NNINLASIFD 60 APVSSPFPYS YLEDPDPFLD FLPQDHHQFS SSSNSSSFSF DAFPLQNNNT NLFNTDLPLS 120 QPSTKKRASS EVVNIAPTSP SSNSVSSSSK EVANDNIDKD ATLKDPEEGE QEQKGTKPQL 180 KAKKKNQKKA REARVAFLTR SDIDNLDDGY RWRKYGQKAV KNSPYPRSYY RCTTVGCGVK 240 KRVERSSDDP YIVMTTYEGQ HTHPFPMTRG HIAMLTSPIL DHGATATSSS SFAIPPRYLL 300 TQHHQPYSSM YSNSLSMINR SSSDGTFVNP GSSSFPGFGY DMSQASTSTT SAIRDHGLLQ 360 DILPSQIRSD TTNTRTNQED KK

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEQLNSTKNT ETKIQHQEDQ QQQMFQATTS SHMANLDTSS DHHHQLELAG NNINLASIFD  60
APVSSPFPYS YLEDPDPFLD FLPQDHHQFS SSSNSSSFSF DAFPLQNNNT NLFNTDLPLS  120
QPSTKKRASS EVVNIAPTSP SSNSVSSSSK EVANDNIDKD ATLKDPEEGE QEQKGTKPQL  180
KAKKKNQKKA REARVAFLTR SDIDNLDDGY RWRKYGQKAV KNSPYPRSYY RCTTVGCGVK  240
KRVERSSDDP YIVMTTYEGQ HTHPFPMTRG HIAMLTSPIL DHGATATSSS SFAIPPRYLL  300
TQHHQPYSSM YSNSLSMINR SSSDGTFVNP GSSSFPGFGY DMSQASTSTT SAIRDHGLLQ  360
DILPSQIRSD TTNTRTNQED KK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	199	266	10	77	Probable WRKY transcription factor 4
2lex_A	2e-27	199	266	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00045.1_g00051.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430080	0.0	KF430080.1 Brassica rapa WRKY transcription factor 75 (WRKY75) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454047.1	0.0	PREDICTED: probable WRKY transcription factor 48, partial
Swissprot	Q9FGZ4	1e-146	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A0D3E0Y5	0.0	A0A0D3E0Y5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DNT0	0.0	A0A3P6DNT0_BRAOL; Uncharacterized protein
STRING	Bo9g009900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-127	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]