PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00044.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 177aa    MW: 19828.8 Da    PI: 7.1431
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00044.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.1e-31116174159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDg++WrKYG+K+vk+s++pr+Y++C+  gCpvkk+ver+ +dp++v++tYeg Hnh+
  Rsa1.0_00044.1_g00021.1 116 LDDGFKWRKYGKKMVKNSPNPRNYFKCSADGCPVKKRVERDGDDPRFVITTYEGFHNHS 174
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-32102175IPR003657WRKY domain
SuperFamilySSF1182901.7E-27109174IPR003657WRKY domain
PROSITE profilePS5081129.826111176IPR003657WRKY domain
SMARTSM007743.5E-36116175IPR003657WRKY domain
PfamPF031062.2E-24117173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNDAETNLGR RFSDDTYSGF DLPDMYLSDE WMDDNLVSAV SGMNHSYGYQ TSDDAHHPAA  60
FFSGSSSSFD HPKSPSTNAS VAAATATGSA EKQIKKEKKK VKERVAFKTQ SDVEVLDDGF  120
KWRKYGKKMV KNSPNPRNYF KCSADGCPVK KRVERDGDDP RFVITTYEGF HNHSSMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26106173774Probable WRKY transcription factor 4
2lex_A6e-26106173774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00044.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483378.11e-131PREDICTED: probable WRKY transcription factor 50 isoform X1
SwissprotQ8VWQ53e-88WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A078IRM81e-104A0A078IRM8_BRANA; BnaC07g49530D protein
TrEMBLA0A0D3DCP21e-104A0A0D3DCP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4Y51e-104A0A3P6E4Y5_BRAOL; Uncharacterized protein
STRINGBo7g095430.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-70WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]