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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00040.1_g00044.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
CO-like |
Protein Properties |
Length: 354aa MW: 39437.7 Da PI: 7.2129 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00040.1_g00044.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 18.9 | 3.2e-06 | 10 | 52 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+ C+++ + + +C+ ++ +lC +C + H H++v
Rsa1.0_00040.1_g00044.1 10 QACDTCRSAACTVYCRADSAYLCTSCDAQVHAAnrlasrHERV 52
57******99*********************556788888776 PP
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2 | zf-B_box | 35.6 | 1.9e-11 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
r+C+ +e+ ++ +fC+ + lC C +++H+ H++vp+
Rsa1.0_00040.1_g00044.1 52 VRVCQSCERAPAAFFCKADAASLCTACDSQIHSAnplarrHQRVPI 97
689*****************************66899999**9997 PP
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3 | CCT | 67.3 | 4.1e-23 | 287 | 331 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45
R+a+++RY+eK+ktRkFeK+irY+sRK++Ae+RpR+KGrF+k++e
Rsa1.0_00040.1_g00044.1 287 RKARVMRYREKKKTRKFEKTIRYASRKEYAEKRPRIKGRFAKRNE 331
9*****************************************975 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0007623 | Biological Process | circadian rhythm |
GO:0009909 | Biological Process | regulation of flower development |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering |
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering |
GO:0005622 | Cellular Component | intracellular |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MLKQESNWAQ ACDTCRSAAC TVYCRADSAY LCTSCDAQVH AANRLASRHE RVRVCQSCER 60 APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPI SGSMATNHSS ETTEPENIVV 120 VGQEEEDEAE AASWLLPSSV KNCGDNNNNN NNNNNNNNNS SQSNRFSVGE EYLDLVDYSS 180 SMDKRFIGQS NQYQQDYNVP QRSYVADGVV PLQVDVSKGH MHHEQHNYQF GFTNVSSEAY 240 GSSNGSPIHM VSLVPESTTT SDATVSPKAA TEELPNAPVQ MLSPMERKAR VMRYREKKKT 300 RKFEKTIRYA SRKEYAEKRP RIKGRFAKRN EVDADQGLST MVMFDTGYGI VPSF
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU694070 | 0.0 | EU694070.1 Brassica nigra isolate 1413 haplotype 1 COL1 (COL1) gene, partial cds. |