 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Rsa1.0_00039.1_g00046.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 319aa MW: 35775.1 Da PI: 8.9947 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00039.1_g00046.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 171.6 | 2.4e-53 | 13 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkat
Rsa1.0_00039.1_g00046.1 13 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-SIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKAT 97
79****************************.89***************988899******************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g+dk++++ ++++vg+kk Lvfy g+ pkg ktdW+mheyrl
Rsa1.0_00039.1_g00046.1 98 GTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKTDWIMHEYRL 139
****************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MGDSTIGPGH PHLPPGFRFH PTDEELVVHY LKKKAASIPL PVSIIAEIDL YKFDPWELPS 60
KASFGEQEWY FFSPRDRKYP NGVRPNRAAT SGYWKATGTD KPIFTCNSHK VGVKKALVFY 120
GGKPPKGIKT DWIMHEYRLT DGNLNTAAKP PDSTTSRKNS LRLDDWVLCR IYKKNSSQRP 180
TMERVLLRED LMEGMLSKSS ANSSSTSVLD NNNNNNNNEE HFFDGMAVSS DKRSLCGQYR 240
IGHEATGSSS FGSFLSSKRF HHTSDLNNDN YNVSFVSMLS EIPQSSGFHG NGVIDTTSTL 300
ADHGVLRQAF QLPNMNWHP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-74 | 13 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-74 | 13 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-74 | 13 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-74 | 13 | 177 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-74 | 13 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 4e-74 | 13 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 4e-74 | 13 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 4e-74 | 13 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 4e-74 | 13 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 4e-74 | 13 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 4e-74 | 13 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 4e-74 | 13 | 177 | 20 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 4e-74 | 13 | 177 | 17 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 4e-74 | 13 | 177 | 17 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF974759 | 0.0 | KF974759.1 Brassica napus NAC transcription factor 25-1 (NAC25-1.1) mRNA, complete cds. |
