|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Rsa1.0_00039.1_g00013.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
Dof |
Protein Properties |
Length: 394aa MW: 42613.8 Da PI: 8.352 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00039.1_g00013.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 124 | 4.7e-39 | 69 | 128 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s
Rsa1.0_00039.1_g00013.1 69 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 128
6789*****************************************************976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MGLTSLQVCM DSDWLQEAES GGSMLDSTTT SPSAADILAA CSTQPQVSAV AVAAAAMMDG 60 GRRLRPPHDH PQKCPRCEST HTKFCYYNNY SLSQPRYFCK TCRRYWTKGG TLRNIPVGGG 120 CRKNKKPSSS NTSSSKKPSS DLMALAHSHQ NYQNASLGFS HFGGNGMMGS YTAPDHSNVG 180 FLESKYGSLF SQSPRPIDFL DGKFDLMGVN NNLVMVDHGS NGDHQHNHHM GLSHGLGLNN 240 NNNGGLMDIS TCQRLILNNY DHHHYNHHED NQRVTSVMDV KPSPKLLSLD WQQEQGYSEG 300 SGNGGGGRSD GSGYGGGGGY INSLAGSTFV SSSMKNNGFS SLKDAVWAAL CYFLGGFILL 360 CMELLVKNRW VKVGLSIAIT SMVIGVAIFS KEKK
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK228992 | 1e-154 | AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12. |
GenBank | BT020467 | 1e-154 | BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds. |
GenBank | BT020576 | 1e-154 | BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds. |