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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00037.1_g00011.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
SRS |
| Protein Properties |
Length: 312aa MW: 33448.3 Da PI: 5.9731 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00037.1_g00011.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 220.3 | 3.9e-68 | 86 | 242 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskk 82
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + + ++ +kr+r++ +
Rsa1.0_00037.1_g00011.1 86 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGSGGSgsgggGSSIPKRHRDT---T 168
67899****************************************************9998887776777667777777775...6 PP
DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
+ st l+s ++ e+e +s+P+evss+a+frcv++s+vdd ++ ++aYqt+v+igGh+fkGiLydqG+e+
Rsa1.0_00037.1_g00011.1 169 LPGTLSTDLPSDSAGLEIEEASFPPEVSSDALFRCVKMSGVDDggEDGQYAYQTTVNIGGHLFKGILYDQGPES 242
67778899999********************************766789***********************96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MAGMFSLGGN NNNGEEENQQ QEEKTNWVWY RSNTNTNNIN PSSSVWQIPP EQQLLMHHHQ 60
PQTQQQSLDL YPGHQIDVSD LATSSRSITI SCRDCGNQAK KDCTHMRCRT CCKSRGFDCS 120
THVRSTWIPV ARRRERQQQL HMSTSGGSGG SGSGGGGSSI PKRHRDTTLP GTLSTDLPSD 180
SAGLEIEEAS FPPEVSSDAL FRCVKMSGVD DGGEDGQYAY QTTVNIGGHL FKGILYDQGP 240
ESSYVSGGSG GSDHQSSSAG GGNPFNTPAV ADGGGGSSTM FVDPNSSGYY SSNMATMFAP 300
PGTQFYQNPP RS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205264 | 0.0 | GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT4G36260.1 | 1e-135 | Lateral root primordium (LRP) protein-related |
