PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00029.1_g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 263aa MW: 29028 Da PI: 7.57 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 69 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+ri s +++Lr +l + K +Ka+ L k+v+ +k+L Rsa1.0_00029.1_g00026.1 69 RNHKEAERRRRERISSHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 115 58***********************997.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.999 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-11 | 69 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-11 | 69 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-7 | 69 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-8 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 5.0E-4 | 154 | 220 | No hit | No description |
CDD | cd04873 | 0.0039 | 155 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MQPESSDQMM YSLLTGNQIS GGGFCLSEDY MSTMPSLCGS SSSTSSYYPL AISGIGERLA 60 QDRAIAALRN HKEAERRRRE RISSHLNKLR NVLSCNSKTD KATLLAKVVQ RVKELKQQTL 120 EISDADQTLL PSETDEISVL HYGDYSNEGH IIFKVSLCSD DRSDLLSDLM EILKSLHMKT 180 LRAEMVTLGG RTRTVLVVAA DKEMHGVESV HFLQNALKSL LERSSKSLME RSSDAGGGEL 240 SKRRRALDHS IMVCRAGSEI TGA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 74 | 79 | ERRRRE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00029.1_g00026.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474832.1 | 0.0 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 1e-140 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A1J3GMC5 | 1e-153 | A0A1J3GMC5_NOCCA; Uncharacterized protein | ||||
STRING | Bra004599.1-P | 1e-151 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-107 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|