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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00028.1_g00056.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bZIP |
Protein Properties |
Length: 354aa MW: 38921.5 Da PI: 8.4629 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00028.1_g00056.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 48.3 | 2.1e-15 | 143 | 194 | 4 | 55 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55
+kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++
Rsa1.0_00028.1_g00056.1 143 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 194
79****************************************9988776665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus |
GO:0071333 | Biological Process | cellular response to glucose stimulus |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MSGNHLWSEL ASKERNGMNR SDSEWALQRF IQESEAYGVS VSGPPSPPPS VPVDSEEYRE 60 FLKSKLNLAC AAVAMKRGAF IKPQDTSGRS ENGGAYTSTA SEQGSLPSSK ATPVVSSAIT 120 SGSELSGDEE EADGETNMNP TNVKRVKRML SNRESARRSR RRKQAHLSEL ETQVSQLRVE 180 NSNLMKGLTD VTQTFNDAAV ENRVLKANIE TLRAKVKMAE ETVKRLTGLN PMFHTMPQVS 240 TVSNPSETTS DSLDTNVQVT TPEISSGNKS KALTGCKMNR TESMRRVASL EHLQKRIRSV 300 GDHDAVCRRV LSLELKTEPE DSVADSSPVA MSNKAEEKKR LRSPQAPKTM YEDE
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 156 | 163 | RRSRRRKQ |
2 | 158 | 163 | SRRRKQ |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269|PubMed:26263501, ECO:0000269|PubMed:29348240}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Strongly repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK353265 | 0.0 | AK353265.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-D15. |
Publications
? help Back to Top |
- Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] - Brand LH, et al.
Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Mair A, et al.
SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] - Pedrotti L, et al.
Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]
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