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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00028.1_g00044.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 390aa MW: 43857.1 Da PI: 7.356 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00028.1_g00044.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 105.4 | 3e-33 | 210 | 268 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK vk+s++prsYYrCt gC vkk+vers+++p++v +tYeg+H+h+
Rsa1.0_00028.1_g00044.1 210 LDDGYRWRKYGQKAVKNSPYPRSYYRCTIVGCGVKKRVERSSDNPSIVMTTYEGQHTHP 268
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MEKKIKEDHH QEQQREELNS TKNTETTTST HMMNLVTSSD HHHHQMELAG NNMNLSTIFD 60 TPISSPFPYS YFSDHSSNNP NSFLYLLRQD QPQFASSSNS SSFSFDAFHL QNNTNHFFTD 120 LSTSQPITKA ESSEVVSTTP TSPNSTSFSS SSNEAANENI NKEVTVKDQE DGDQHEPKGT 180 KPQMKAKKKQ QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTIVG 240 CGVKKRVERS SDNPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDLGAT TASSSSSFSI 300 PQPRYLLSQH HQPYSSMYNK NSLSMINRSS SSDGTFVNPG SSSFHGFAYE MSQASTSTTT 360 IRDHGLLQDI LPSQIRSDTI NTRTNEEDKI
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF430059 | 0.0 | KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds. |